3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05179

Details:

PFam ID : PF05179

PFam Domain Description : RNA pol II accessory factor, Cdc73 family

Number of Sequence in 50% Dataset : 56

Number of Sequence in Full Dataset : 175

Average sequence length: 255.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05179	D2UXU8_NAEGR_206_502	92.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05179	B7PWD3_IXOSC_151_283	100

Sequence based PCA Plot of the family - PF05179 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=2 Length=27
Motif2 Start=75 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay