3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01197

Details:

PFam ID : PF01197

PFam Domain Description : Ribosomal protein L31

Number of Sequence in 50% Dataset : 21

Number of Sequence in Full Dataset : 1042

Average sequence length: 71.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01197	A6G737_9DELT_1_80	70

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01197	B2NF56_UREUR_1_69	100

Sequence based PCA Plot of the family - PF01197 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=18 Length=11
Motif2 Start=2 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay