3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04560

Details:

PFam ID : PF04560

PFam Domain Description : RNA polymerase Rpb2, domain 7

Number of Sequence in 50% Dataset : 30

Number of Sequence in Full Dataset : 911

Average sequence length: 84.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04560	UL17_HHV6Z_133_427	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04560	B2W234_PYRTR_1098_1120	98.6

Sequence based PCA Plot of the family - PF04560 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=17
Motif2 Start=56 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay