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3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02508
Details:

PFam ID : PF02508

PFam Domain Description : Rnf-Nqr subunit, membrane protein

Number of Sequence in 50% Dataset : 45

Number of Sequence in Full Dataset : 1006

Average sequence length: 191.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF02508Q1Q255_9BACT_268_471100
HMMER Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF02508D4LED9_9FIRM_2_197100
Sequence based PCA Plot of the family - PF02508 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=150 Length=8
Motif2 Start=23 Length=8
Motif3 Start=192 Length=8
Motif4 Start=126 Length=8
Download PSSM/HMM Models/Alignment:
Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay