3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00828

Details:

PFam ID : PF00828

PFam Domain Description : Ribosomal protein L18e/L15

Number of Sequence in 50% Dataset : 51

Number of Sequence in Full Dataset : 1772

Average sequence length: 118.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00828	A2YC64_ORYSI_309_361	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00828	Q5YBB9_HELSJ_1_90	99.2

Sequence based PCA Plot of the family - PF00828 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=113 Length=8
Motif2 Start=33 Length=8
Motif3 Start=1 Length=14
Motif4 Start=140 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay