3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00177

Details:

PFam ID : PF00177

PFam Domain Description : Ribosomal protein S7p/S5e

Number of Sequence in 50% Dataset : 91

Number of Sequence in Full Dataset : 1177

Average sequence length: 146.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00177	E2E9Z3_9STRA_143_211	65.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00177	RT07_PROWI_7_214	100

Sequence based PCA Plot of the family - PF00177 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=9 Length=8
Motif2 Start=24 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay