3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06016

Details:

PFam ID : PF06016

PFam Domain Description : Reovirus core-spike protein lambda-2 (L2)

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 14

Average sequence length: 946

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06016	B5A1N3_9REOV_1_201	87.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06016	VP1_AQRVG_1_1298	100

Sequence based PCA Plot of the family - PF06016 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=534 Length=8
Motif2 Start=392 Length=8
Motif3 Start=825 Length=8
Motif4 Start=614 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay