3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12137

Details:

PFam ID : PF12137

PFam Domain Description : RNA polymerase recycling family C-terminal

Number of Sequence in 50% Dataset : 43

Number of Sequence in Full Dataset : 139

Average sequence length: 350.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12137	D5EKW8_CORAD_578_944	92.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12137	D5EKW8_CORAD_578_944	100

Sequence based PCA Plot of the family - PF12137 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=79 Length=11
Motif2 Start=2 Length=8
Motif3 Start=21 Length=14
Motif4 Start=200 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay