3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04090

Details:

PFam ID : PF04090

PFam Domain Description : RNA polymerase I specific initiation factor

Number of Sequence in 50% Dataset : 29

Number of Sequence in Full Dataset : 52

Average sequence length: 176.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04090	D5G780_TUBMM_81_233	75

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04090	A5E1E3_LODEL_212_420	100

Sequence based PCA Plot of the family - PF04090 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=41 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay