3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06045

Details:

PFam ID : PF06045

PFam Domain Description : Rhamnogalacturonate lyase family

Number of Sequence in 50% Dataset : 26

Number of Sequence in Full Dataset : 85

Average sequence length: 157.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06045	D2C043_DICD5_14_200	52

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06045	A3XLZ2_LEEBM_243_438	97.6

Sequence based PCA Plot of the family - PF06045 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=13 Length=8
Motif2 Start=148 Length=8
Motif3 Start=87 Length=8
Motif4 Start=4 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay