3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03330

Details:

PFam ID : PF03330

PFam Domain Description : Rare lipoprotein A (RlpA)-like double-psi beta-barrel

Number of Sequence in 50% Dataset : 93

Number of Sequence in Full Dataset : 1626

Average sequence length: 87.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03330	E4MNP1_CAPOC_2_57	85.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03330	E4MNP1_CAPOC_2_57	98.8

Sequence based PCA Plot of the family - PF03330 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=9 Length=17
Motif2 Start=41 Length=8
Motif3 Start=28 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay