3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01778

Details:

PFam ID : PF01778

PFam Domain Description : Ribosomal L28e protein family

Number of Sequence in 50% Dataset : 47

Number of Sequence in Full Dataset : 297

Average sequence length: 113.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01778	B5KGP9_9CNID_35_103	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01778	D2UXX7_NAEGR_6_164	100

Sequence based PCA Plot of the family - PF01778 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=32 Length=8
Motif2 Start=1 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay