3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01775

Details:

PFam ID : PF01775

PFam Domain Description : Ribosomal L18ae/LX protein domain

Number of Sequence in 50% Dataset : 25

Number of Sequence in Full Dataset : 210

Average sequence length: 92.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01775	B0WX74_CULQU_178_299	20.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01775	Q015Y8_OSTTA_12_204	97.1

Sequence based PCA Plot of the family - PF01775 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=2 Length=27
Motif2 Start=106 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay