3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09511

Details:

PFam ID : PF09511

PFam Domain Description : RNA ligase

Number of Sequence in 50% Dataset : 72

Number of Sequence in Full Dataset : 169

Average sequence length: 214.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09511	D2VYM3_NAEGR_250_386	92.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09511	Q4E143_TRYCR_57_295	100

Sequence based PCA Plot of the family - PF09511 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=49 Length=8
Motif2 Start=1 Length=8
Motif3 Start=200 Length=8
Motif4 Start=18 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay