3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06970

Details:

PFam ID : PF06970

PFam Domain Description : Replication initiator protein A (RepA) N-terminus

Number of Sequence in 50% Dataset : 46

Number of Sequence in Full Dataset : 212

Average sequence length: 73.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06970	C0XMU3_LACHI_6_75	20

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06970	Q3EZC2_BACTI_14_102	100

Sequence based PCA Plot of the family - PF06970 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=30
Motif2 Start=42 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay