3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04997

Details:

PFam ID : PF04997

PFam Domain Description : RNA polymerase Rpb1, domain 1

Number of Sequence in 50% Dataset : 278

Number of Sequence in Full Dataset : 2332

Average sequence length: 258.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04997	B8M0T3_TALSN_9_467	82.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04997	Q3DBH8_STRAG_1_55	99.8

Sequence based PCA Plot of the family - PF04997 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=52 Length=8
Motif2 Start=418 Length=11
Motif3 Start=65 Length=8
Motif4 Start=442 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay