3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04582

Details:

PFam ID : PF04582

PFam Domain Description : Reovirus sigma C capsid protein

Number of Sequence in 50% Dataset : 17

Number of Sequence in Full Dataset : 51

Average sequence length: 237.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04582	C0M039_9REOV_1_116	18.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04582	A3E174_9REOV_2_329	100

Sequence based PCA Plot of the family - PF04582 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=24 Length=8
Motif2 Start=15 Length=8
Motif3 Start=6 Length=8
Motif4 Start=175 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay