3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02945

Details:

PFam ID : PF02945

PFam Domain Description : Recombination endonuclease VII

Number of Sequence in 50% Dataset : 50

Number of Sequence in Full Dataset : 127

Average sequence length: 83.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02945	B5H179_STRCL_31_85	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02945	D5GV21_9CAUD_9_110	100

Sequence based PCA Plot of the family - PF02945 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=15 Length=28

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay