3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01192

Details:

PFam ID : PF01192

PFam Domain Description : RNA polymerase Rpb6

Number of Sequence in 50% Dataset : 36

Number of Sequence in Full Dataset : 956

Average sequence length: 54.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01192	C4LIT4_CORK4_66_93	2.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01192	RPOZ_THEMA_12_67	96.3

Sequence based PCA Plot of the family - PF01192 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=6 Length=8
Motif4 Start=50 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay