3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00673

Details:

PFam ID : PF00673

PFam Domain Description : ribosomal L5P family C-terminus

Number of Sequence in 50% Dataset : 34

Number of Sequence in Full Dataset : 991

Average sequence length: 95.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00673	D2MKS4_9BACT_105_137	84.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00673	B5SQ87_9STRA_74_174	95.4

Sequence based PCA Plot of the family - PF00673 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=56 Length=14
Motif2 Start=38 Length=11
Motif3 Start=1 Length=19

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay