3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10247

Details:

PFam ID : PF10247

PFam Domain Description : Reactive mitochondrial oxygen species modulator 1

Number of Sequence in 50% Dataset : 15

Number of Sequence in Full Dataset : 85

Average sequence length: 62.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10247	Q2H594_CHAGB_13_43	28.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10247	A8DZ48_CAEEL_7_69	98.8

Sequence based PCA Plot of the family - PF10247 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=21 Length=8
Motif2 Start=1 Length=8
Motif3 Start=12 Length=8
Motif4 Start=54 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay