3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01694

Details:

PFam ID : PF01694

PFam Domain Description : Rhomboid family

Number of Sequence in 50% Dataset : 660

Number of Sequence in Full Dataset : 2801

Average sequence length: 148.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01694	C1N0Z8_MICPC_154_367	95.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01694	B0DIF5_LACBS_217_262	100

Sequence based PCA Plot of the family - PF01694 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=55 Length=8
Motif2 Start=35 Length=8
Motif3 Start=77 Length=8
Motif4 Start=21 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay