3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10385

Details:

PFam ID : PF10385

PFam Domain Description : RNA polymerase beta subunit external 1 domain

Number of Sequence in 50% Dataset : 24

Number of Sequence in Full Dataset : 1473

Average sequence length: 66.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10385	Q8KRK1_LACBR_1_32	52.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10385	RPOB1_LEPTE_986_1057	100

Sequence based PCA Plot of the family - PF10385 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=17 Length=23
Motif2 Start=1 Length=8
Motif3 Start=59 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay