3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01664

Details:

PFam ID : PF01664

PFam Domain Description : Reovirus viral attachment protein sigma 1

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 11

Average sequence length: 198.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01664	Q85695_9REOV_239_454	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01664	Q86339_9REOV_236_454	100

Sequence based PCA Plot of the family - PF01664 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=138 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay