3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08542

Details:

PFam ID : PF08542

PFam Domain Description : Replication factor C C-terminal domain

Number of Sequence in 50% Dataset : 138

Number of Sequence in Full Dataset : 674

Average sequence length: 89.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08542	A4ZVG8_BRAJU_314_357	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08542	C4M3A3_ENTHI_176_323	99.4

Sequence based PCA Plot of the family - PF08542 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=33 Length=8
Motif4 Start=76 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay