3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01770

Details:

PFam ID : PF01770

PFam Domain Description : Reduced folate carrier

Number of Sequence in 50% Dataset : 80

Number of Sequence in Full Dataset : 159

Average sequence length: 275.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01770	A9V291_MONBE_11_434	70.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01770	D3BBP2_POLPA_106_287	100

Sequence based PCA Plot of the family - PF01770 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=242 Length=8
Motif2 Start=17 Length=8
Motif3 Start=355 Length=8
Motif4 Start=252 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay