3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10255

Details:

PFam ID : PF10255

PFam Domain Description : RNA polymerase I-associated factor PAF67

Number of Sequence in 50% Dataset : 46

Number of Sequence in Full Dataset : 104

Average sequence length: 324.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10255	A7T6P9_NEMVE_169_221	77.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10255	Q5CI28_CRYHO_155_649	100

Sequence based PCA Plot of the family - PF10255 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=7 Length=8
Motif2 Start=271 Length=8
Motif3 Start=315 Length=8
Motif4 Start=35 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay