3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08504

Details:

PFam ID : PF08504

PFam Domain Description : Runx inhibition domain

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 24

Average sequence length: 92.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08504	B3F0K5_ELECQ_310_399	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08504	Q6YI83_BRAFL_383_489	100

Sequence based PCA Plot of the family - PF08504 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay