3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00829

Details:

PFam ID : PF00829

PFam Domain Description : Ribosomal prokaryotic L21 protein

Number of Sequence in 50% Dataset : 39

Number of Sequence in Full Dataset : 1082

Average sequence length: 94.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00829	A2YC64_ORYSI_309_361	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00829	B1ZB93_METPB_1_104	100

Sequence based PCA Plot of the family - PF00829 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=34 Length=8
Motif2 Start=1 Length=23
Motif3 Start=80 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay