3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00317

Details:

PFam ID : PF00317

PFam Domain Description : Ribonucleotide reductase, all-alpha domain

Number of Sequence in 50% Dataset : 45

Number of Sequence in Full Dataset : 1171

Average sequence length: 78.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00317	Q50104_MYCLE_1_48	54.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00317	D4N4A7_9CAUD_24_107	99.9

Sequence based PCA Plot of the family - PF00317 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=26 Length=20
Motif2 Start=117 Length=8
Motif3 Start=11 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay