3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12136

Details:

PFam ID : PF12136

PFam Domain Description : RNA polymerase Rpo13 subunit HTH domain

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 11

Average sequence length: 37.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12136	A3DN92_STAMF_11_54	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12136	E0SPY1_IGNAA_23_60	80

Sequence based PCA Plot of the family - PF12136 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=30
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay