3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04221

Details:

PFam ID : PF04221

PFam Domain Description : RelB antitoxin

Number of Sequence in 50% Dataset : 190

Number of Sequence in Full Dataset : 809

Average sequence length: 79.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04221	C4ZAZ9_EUBR3_1_60	52.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04221	C4G342_ABIDE_4_95	99.8

Sequence based PCA Plot of the family - PF04221 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=6 Length=31

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay