3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00572

Details:

PFam ID : PF00572

PFam Domain Description : Ribosomal protein L13

Number of Sequence in 50% Dataset : 36

Number of Sequence in Full Dataset : 1292

Average sequence length: 122.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00572	Q23YQ6_TETTH_453_590	31.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00572	B3T067_9ZZZZ_1_85	100

Sequence based PCA Plot of the family - PF00572 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=61 Length=8
Motif2 Start=12 Length=30

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay