3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01421

Details:

PFam ID : PF01421

PFam Domain Description : Reprolysin (M12B) family zinc metalloprotease

Number of Sequence in 50% Dataset : 140

Number of Sequence in Full Dataset : 701

Average sequence length: 184.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01421	B7P5D4_IXOSC_73_305	88.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01421	Q4RI84_TETNG_1_122	100

Sequence based PCA Plot of the family - PF01421 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=21 Length=8
Motif2 Start=3 Length=17
Motif3 Start=197 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay