3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04353

Details:

PFam ID : PF04353

PFam Domain Description : Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ

Number of Sequence in 50% Dataset : 13

Number of Sequence in Full Dataset : 103

Average sequence length: 148.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04353	D4BL15_9ENTR_1_72	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04353	Q0VSZ1_ALCBS_1_157	100

Sequence based PCA Plot of the family - PF04353 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=2 Length=17
Motif2 Start=38 Length=11
Motif3 Start=74 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay