3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12651

Details:

PFam ID : PF12651

PFam Domain Description : Ribbon-helix-helix domain

Number of Sequence in 50% Dataset : 49

Number of Sequence in Full Dataset : 104

Average sequence length: 41.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12651	D6V508_9BRAD_1_41	27.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12651	Q8KGZ5_RHILO_4_47	100

Sequence based PCA Plot of the family - PF12651 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=37

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay