3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00189

Details:

PFam ID : PF00189

PFam Domain Description : Ribosomal protein S3, C-terminal domain

Number of Sequence in 50% Dataset : 56

Number of Sequence in Full Dataset : 955

Average sequence length: 83.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00189	A1E4W1_9CHLO_1_40	87.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00189	Q6VEE5_EMIHU_173_279	98.9

Sequence based PCA Plot of the family - PF00189 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=10 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay