3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00181

Details:

PFam ID : PF00181

PFam Domain Description : Ribosomal Proteins L2, RNA binding domain

Number of Sequence in 50% Dataset : 24

Number of Sequence in Full Dataset : 1278

Average sequence length: 75.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00181	C4QC81_SCHMA_95_175	47.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00181	RK2_BIGNA_2_61	96.9

Sequence based PCA Plot of the family - PF00181 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=65 Length=8
Motif2 Start=1 Length=28

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay