3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00861

Details:

PFam ID : PF00861

PFam Domain Description : Ribosomal L18p/L5e family

Number of Sequence in 50% Dataset : 38

Number of Sequence in Full Dataset : 1327

Average sequence length: 117.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00861	Q3LVV6_BIGNA_27_152	86.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00861	Q3LVV6_BIGNA_27_152	99.1

Sequence based PCA Plot of the family - PF00861 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=75 Length=8
Motif2 Start=23 Length=17
Motif3 Start=117 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay