3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01196

Details:

PFam ID : PF01196

PFam Domain Description : Ribosomal protein L17

Number of Sequence in 50% Dataset : 34

Number of Sequence in Full Dataset : 975

Average sequence length: 101.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01196	D4LMQ8_9FIRM_17_169	9.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01196	D5SQ97_PLAL2_20_169	100

Sequence based PCA Plot of the family - PF01196 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=30 Length=8
Motif2 Start=8 Length=11
Motif3 Start=137 Length=11
Motif4 Start=121 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay