3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04597

Details:

PFam ID : PF04597

PFam Domain Description : Ribophorin I

Number of Sequence in 50% Dataset : 59

Number of Sequence in Full Dataset : 161

Average sequence length: 396.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04597	B9PUK6_TOXGO_263_788	84.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04597	E6ZQX5_9BASI_27_498	100

Sequence based PCA Plot of the family - PF04597 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=68 Length=8
Motif3 Start=16 Length=8
Motif4 Start=44 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay