3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04990

Details:

PFam ID : PF04990

PFam Domain Description : RNA polymerase Rpb1, domain 7

Number of Sequence in 50% Dataset : 37

Number of Sequence in Full Dataset : 160

Average sequence length: 124.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04990	F2Y0U8_9PHYC_1102_1235	94.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04990	Q84KP6_CYAME_1153_1323	100

Sequence based PCA Plot of the family - PF04990 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=20 Length=8
Motif2 Start=121 Length=8
Motif3 Start=50 Length=8
Motif4 Start=11 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay