3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04057

Details:

PFam ID : PF04057

PFam Domain Description : Replication factor-A protein 1, N-terminal domain

Number of Sequence in 50% Dataset : 67

Number of Sequence in Full Dataset : 171

Average sequence length: 95.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04057	B5YN37_THAPS_4_89	89.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04057	D8PV35_SCHCM_6_116	100

Sequence based PCA Plot of the family - PF04057 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=90 Length=8
Motif4 Start=41 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay