3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00161

Details:

PFam ID : PF00161

PFam Domain Description : Ribosome inactivating protein

Number of Sequence in 50% Dataset : 103

Number of Sequence in Full Dataset : 224

Average sequence length: 187.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00161	Q6K2U8_ORYSJ_14_229	94.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00161	C0HFG1_MAIZE_8_248	100

Sequence based PCA Plot of the family - PF00161 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=66 Length=8
Motif4 Start=154 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay