3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10443

Details:

PFam ID : PF10443

PFam Domain Description : RNA12 protein

Number of Sequence in 50% Dataset : 25

Number of Sequence in Full Dataset : 73

Average sequence length: 395.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10443	D3AVQ4_POLPA_248_594	75

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10443	YME2_KLULA_348_771	100

Sequence based PCA Plot of the family - PF10443 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=49 Length=8
Motif2 Start=18 Length=8
Motif3 Start=284 Length=8
Motif4 Start=161 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay