3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00416

Details:

PFam ID : PF00416

PFam Domain Description : Ribosomal protein S13/S18

Number of Sequence in 50% Dataset : 62

Number of Sequence in Full Dataset : 1147

Average sequence length: 107.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00416	YM08_PARTE_65_112	80.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00416	Q4V607_DROME_1_117	100

Sequence based PCA Plot of the family - PF00416 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=36 Length=8
Motif2 Start=17 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay