3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05001

Details:

PFam ID : PF05001

PFam Domain Description : RNA polymerase Rpb1 C-terminal repeat

Number of Sequence in 50% Dataset : 325

Number of Sequence in Full Dataset : 342

Average sequence length: 14.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05001	A6NYC6_9BACE_615_714	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05001	O35559_CRIGR_1910_1923	91.7

Sequence based PCA Plot of the family - PF05001 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay