3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01857

Details:

PFam ID : PF01857

PFam Domain Description : Retinoblastoma-associated protein B domain

Number of Sequence in 50% Dataset : 40

Number of Sequence in Full Dataset : 122

Average sequence length: 134.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01857	E1ZEA5_9CHLO_547_702	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01857	E1ZEA5_9CHLO_547_702	100

Sequence based PCA Plot of the family - PF01857 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=104 Length=8
Motif4 Start=45 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay