3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00312

Details:

PFam ID : PF00312

PFam Domain Description : Ribosomal protein S15

Number of Sequence in 50% Dataset : 21

Number of Sequence in Full Dataset : 1339

Average sequence length: 81.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00312	A0C3W3_PARTE_30_109	10

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00312	Q05FS1_CARRP_1_65	96.6

Sequence based PCA Plot of the family - PF00312 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=69 Length=11
Motif2 Start=34 Length=8
Motif3 Start=13 Length=17
Motif4 Start=55 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay