3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12923

Details:

PFam ID : PF12923

PFam Domain Description : Ribosomal RNA-processing protein 7 (RRP7)

Number of Sequence in 50% Dataset : 44

Number of Sequence in Full Dataset : 141

Average sequence length: 124.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12923	C6LUL7_GIAIB_138_270	97.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12923	D8TPZ7_VOLCA_122_273	100

Sequence based PCA Plot of the family - PF12923 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=76 Length=8
Motif3 Start=60 Length=8
Motif4 Start=16 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay